Prokka
Description
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN files that are ready for editing in Sequin and ultimately submitted to Genbank/DDJB/ENA.
Download
Prokka v1.12 — 14 March 2017 — Download (360MB) — MD5 — Changes — Docs — Paper — GitHub
Feedback
Please report any bugs or suggest enhancements at the Prokka GitHub Issues page.License
Prokka is free software, released under the GPL (version 2).Citation
Seemann T. Prokka: rapid prokaryotic genome annotation. Bioinformatics. 2014 Jul 15;30(14):2068-9. PMID:24642063Requirements
- BioPerl >= 1.6.2
- BLAST+ >= 2.2
- HMMER >= 3.1
- Aragorn >= 1.2
- Prodigal >= 2.0 and <= 2.7
- tbl2asn >= 23.0
- GNU Parallel >= 20130422
- Infernal >= 1.1
Recommended
Optional
- RNAmmer >= 1.2 (requires patch to ensure it uses older HMMer 2.x)
- HMMmmer >= 2.0 (for RNAmmer)
- SignalP >= 3.0 (for --gram / sig_peptide predictions)