Snippy

Synopsis

Snippy finds variants between a haploid reference genome and your NGS sequence reads. It will find both substitutions and insertions/deletions (indels). It will use as many CPUs as you can give it on a single computer (tested to 64 cores). It is designed with speed in mind.

Download

Get the latest stable release or clone the current head.

Documentation

Make sure you read the manual.

Etymology:

The name Snippy is a combination of SNP (pronounced "snip") , snappy (meaning "quick") and Skippy the Bush Kangaroo (to represent its Australian origin)