Snippy finds variants between a haploid
reference genome and your NGS sequence reads.
It will find both substitutions and insertions/deletions (indels).
It will use as many CPUs as you can give it on a single computer (tested to 64 cores).
It is designed with speed in mind.
Get the latest stable release
or clone the current head
Make sure you read the manual
The name Snippy
is a combination of
Skippy the Bush Kangaroo
(to represent its Australian origin)